I hate to say this, but I really don't like it very much.
First of all, I'd be really sure that panel drawing is dimensionally accurate for your aircraft. I would think yours would be about the same as a 690, and that looks a little bit small to me.
Secondly, I believe your engine gauges are actually much smaller than the ones depicted, so that makes a difference.
On engine gauges, I would put them just to the right of the avionics stack, in a stack just like the factory did. I think that works pretty well, and if you ever fly another Turbo Commander, you'll know where to look.
Are you really only going to have 1 GPS, 1 VOR, and 2 coms? Or is that Garmin unit a Nav/Com? The Garmin 225 is a com only, the 255 is a Nav/Com. The one in the layout appears to be a 225...
I'd try to find a way to keep the copilot instruments, but I guess that's just me being old school... You might make sure they're not part of the certification, and also how the backup instrument works with the copilot pitot/static system.
On the iPads, personally I don't have a fixed iPad mount. I prefer to have it in my lap, and be able to set it on the floor or the copilot seat, or whatever, when I'm not using it. However, I can understand why you might want a fixed mount. But why two? Is the idea that an iPad is a cheap MFD?
One issue that I can see is that the panel mounted touch screen can be tough to use in turbulence. The Garmin GTN units stick out from the panel, and you can brace your hand on the unit and then use it more easily. You might think about how that might work with the iPads.
So, that's my feedback... sorry I'm not more positive! The Avidyne unit looks like a good one, and the backup attitude indicator looks very nice. It will be great when it's done!